The Intake

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How much does an EHR system cost? (Budget template included)

Discover how to budget for EHR costs in your independent practice, with benefits and tips for maximizing your electronic health record software investment.

  • Current Version – Mar 11, 2025
    Written by: Rebecca Slawter
    Changes: This article was updated to include the most relevant and up-to-date information available.
Physician and vendor discuss EHR cost while looking at tablet

At a Glance

  • Understanding EHR software costs is vital for effective financial planning.
  • Consider expenses like implementation, training, and ongoing maintenance.
  • Budgeting ensures a balance between functionality needs and financial constraints.

Time is a private healthcare provider's most valuable resource, making an electronic health record (EHR) system critical to your business — streamlining administrative work, organizing patient records, and solving those bottlenecks that keep your practice from thriving.

An EHR is a digital system that stores, manages, and shares comprehensive patient information across multiple healthcare settings. Unlike an electronic medical record (EMR) system, which focuses on a single practice's patient records, an EHR provides broader functionality and interoperability, allowing for seamless data sharing and workflow optimization across various providers and care teams. The right EHR enhances your practice’s efficiency and improves patient care.

So, how much should you expect to pay for it? Budgeting for EHR costs is overwhelming at first, but we've created this guide to help you through the process. Let's dive into the costs of EHR software, including initial EHR pricing estimates, recurring and hidden costs to include in your budget, and how to cover all these costs.

Choosing the right EHR is critical. This free guide walks you through what to look for and how to make the smartest choice.

Understanding the costs of EHR implementation

The cost of an EHR typically involves many practice-specific factors. However, according to Software Path's 2022 EHR report, practices set the average cost for EHR software at $1,200 per user per yearr. Breaking that data down, a small medical practice with 3 users typically expects to pay $300 a month for an EHR system.

However, the real cost of implementing EHR is more complex than that. It includes EHR deployment and varying ongoing costs, such as those required for information technology (IT) needs. Remember: out-of-the-box software costs are only part of your budgeting equation. 

Your EHR budget should include startup costs, equipment costs, and other indirect costs like internet connection upgrades, training, and more. Providers may also have to temporarily decrease their patient numbers as they adjust to the new system.

Upfront costs

These include line items like software licensing fees, implementation support, and initial data migration, but exclude costs like recurring subscription fees or ongoing maintenance expenses.

One big factor when considering your budget is the type of EHR system: on-premise, cloud-based, or hybrid. Each has their pros and cons. On-premise typically costs more upfront, while cloud-based offers more flexibility for scale. Hybrid systems combine elements of both.

Here's an EHR implementation cost breakdown for on-premise and cloud-based systems:

Direct costsIndirect costsRecurring costs
Cloud-based EHR- Software startup fee
- Feature add-ons
- Data migration
- Internet connection upgrades
- Training
- Workflow disruption
- Customization costs
- IT support
On-premise EHR- Software purchase
- Servers
- Data migration
- IT installation
- Local connectivity
- Setup and customization
- Training
- Workflow disruption
- Customization costs
- Maintenance
- IT support
- Updates

Direct costs 

Both cloud-based and on-premise platforms come with an initial cost, with cloud-based systems often requiring a startup fee or upfront annual subscription and on-premise systems necessitating software and hardware purchases. 

While the costs of an EHR depend on your vendor and system choice, here are the typical direct costs you should expect:

  • Software licensing fees: These are costs for acquiring the EHR system, either as a one-time payment for on-premise systems or as subscription-based pricing for cloud-based systems.
  • Hardware purchases: Practices will need to buy modern computers, servers, scanners, and other devices required to operate the system effectively.
  • Infrastructure upgrades: Expenses may include networking equipment, business-grade internet connections, and any necessary power backup systems to support the EHR.
  • Server installation (on-premise systems): On-premise systems involve costs for setting up and maintaining physical servers on-site.
  • IT support: These fees cover the initial setup, technical consultations, and ongoing troubleshooting for the system.
  • Customization costs: Healthcare organizations may need to tailor the EHR system to fit specific workflows or add optional features that align with their needs.

Both options require careful planning and coordination with your vendor. Ask your vendor partner for detailed cost breakdowns specific to their platform to ensure you are prepared before installation.

Indirect costs

When planning your EHR budget, don't forget to include the hidden implementation costs. Both cloud-based and on-premise models will have indirect fees, but they vary. 

Here are the costs they both incur:

  • Staff training costs: According to Tebra's 2024 EHR study, training is one of the most significant challenges private providers and clinicians face when using their current EHR. Many EHRs offer video tutorials or include training as part of their package, but it may come at a fee. 
  • Workflow disruption: Plan for some temporary workflow disruptions and include them in your EHR budget. Besides training time, expect staff to work slower while they get used to the new system in the weeks leading up to and immediately after installation. This often means seeing fewer patients in the office initially.

For a cloud-based EHR solution, indirect costs include:

  • Internet connection upgrades: A reliable and high-speed internet connection is crucial for uninterrupted access to EHRs.
  • Third-party integrations: You may incur small fees for various software integrations that will power up your EHR.

For an on-premise EHR, indirect costs include:

  • IT and maintenance costs: Setting up and maintaining local servers and infrastructure can cost money and time, so prepare for it in your budget.
  • Local connectivity: Ensure that you have robust local network connectivity.
  • Setup and customization: Initial setup and customization are crucial to meeting your practice's needs but often require additional spending.

Understanding these indirect setup costs will ensure a smoother transition and help maximize the benefits of your new EHR system. By budgeting for these expenses ahead of time, you'll be ready to tackle them when they come up.

Recurring costs 

Be sure to plan for recurring costs for any EHR system. Besides monthly or annual subscription fees, cloud-based EHRs may require ongoing IT support for long-term troubleshooting, which can contribute to their overall cost. However, the costs of maintenance and updates are often included in the subscription fees.

Updating on-premise systems might require purchasing new software versions and manual installations by IT staff. Your team will have to handle maintenance, including regular backups and security patches, internally, which may add to their workload. Plus, managing and maintaining local infrastructure often requires ongoing IT support.

Want to see how much an EHR could save you? Use our Cost Savings Calculator.

Evaluating the total cost of ownership

Moving beyond your implementation costs, let's explore the total cost of ownership of an EHR:

  • Initial costs: As mentioned above, initial costs encompass acquiring both hardware and software necessary for your EHR's operation. This might involve buying desktop or laptop computers, mobile workstations, and other necessary office equipment.
  • Implementation and staff training: In addition to the technical installation, you'll also have to allocate time and resources to ensure all team members are comfortable with the new system's features.
  • Ongoing maintenance: Ongoing maintenance, including software updates, security patches, and service fees, is essential to keeping your system up-to-date and operating efficiently.
  • Data import: Include the cost of transferring existing patient records into your new system. Plan for extra time if you're starting with paper records.

How do medical practices pay for EHRs?

According to Tebra's 2024 study, 39% of private practices cite managing costs and financial concerns as the most significant EHR challenge. For many primary care practices and small practices, the upfront costs of EHR adoption, such as software licensing, hardware upgrades, and staff training, can feel overwhelming. 

Luckily, there are several ways to ease the financial burden and make the transition more manageable:

Federal programs

Small and primary care practices often start by exploring federal programs designed to support EHR adoption. For instance, the Medicare and Medicaid EHR Incentive Programs (now part of the Promoting Interoperability Program) provide financial assistance to eligible providers who adopt and meaningfully use certified EHR technology

Additionally, practices may consider vendor financing options, which allow them to spread out the costs over time through subscription-based pricing models.

Local grants and initiatives

State-level grants and local healthcare initiatives may also offer funding opportunities specifically aimed at supporting small practices. Practices can further reduce costs by seeking cloud-based EHR systems, which often have lower upfront costs than on-premise systems, as they eliminate the need for expensive hardware and server installations.

Private practices should work closely with their EHR vendors to identify cost-effective solutions tailored to their needs. Many vendors provide scalable systems that grow with the practice, ensuring affordability while meeting current operational demands. 

With the right resources and planning, EHR adoption can become a manageable and rewarding investment that drives long-term efficiency and patient care improvements.

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EHR system budget template

Planning your EHR implementation can be overwhelming. That's why we created a budget planner, which allows you to easily navigate the total cost of ownership. From initial setup to recurring expenses, this planner covers all aspects to ensure you're fully prepared. 

Don't let unexpected costs catch you off guard — use this planner to budget confidently and set your practice up for long-term success.

Take control of your EHR budget. Click here to access our free budget planner template.
Tebra EHR
Here's a glimpse into Tebra's cloud-based, ONC-certified EHR with integrated billing, telehealth, and eRx- and eLab-ordering workflows. Learn more here.

Put your EHR budget to work

For private practices investing in an EHR or electronic medical records (EMR) system, understanding the full scope of the costs involved is essential. With costs averaging $1,200 per user per year, budgeting ensures you can manage both upfront and ongoing expenses while maximizing your return on investment.

A thoughtful EHR implementation supports your practice's efficiency, improves patient care, and streamlines operations. By considering all the factors we’ve covered — software licensing, hardware requirements, training, workflow adjustments, and ongoing maintenance — you’ll position your private practice for a successful transition to better practice management.

Discover how Tebra's comprehensive, HIPAA-compliant EHR solutions can streamline your operations, boost inpatient and outpatient patient engagement, and help you achieve your goals. Get a free demo today.

Budgeting for an EHR? These resources can help you plan and compare effectively:

Our experts continuously monitor the healthcare and medical billing space to keep our content accurate and up to date. We update articles whenever new information becomes available.
  • Current Version – Mar 11, 2025
    Written by: Rebecca Slawter
    Changes: This article was updated to include the most relevant and up-to-date information available.
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Rebecca Slawter, freelance healthcare writer

Rebecca Slawter is a seasoned freelance content and copywriter focusing on healthcare and B2B SaaS. Rebecca has first-hand knowledge of the importance of connections between patients and their providers — connections that are easier to build in independent practices. Her passion for writing about healthcare is rooted in wanting to spotlight healthcare professionals and their tireless efforts, and to do what she can to improve the industry as a whole.

Reviewed by

Dr. Jesse P. Houghton, MD

Dr. Jesse Houghton, MD is board certified in both Internal Medicine and Gastroenterology. He is an expert in endoscopic procedures and the recipient of numerous awards, including the Best Doctors in America, Ohio Top Docs, Castle-Connelly Top Doctor, and Marquis Who’s Who in Medicine. He is the medical director of Gastroenterology at Southern Ohio Medical Center.

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