Mastering EHR implementation: Challenges, strategies, and a checklist
Transform your practice with a successful EHR implementation plan — tackle common challenges and achieve seamless integration.

At a Glance
- A structured EHR implementation plan ensures a smooth transition and adoption.
- Key steps include staff training, workflow analysis, and system testing.
- Ongoing support and evaluation help maintain system effectiveness and address challenges.
For private healthcare practices, electronic health record (EHR) systems can optimize workflows, transform data management, and lower costs. Successful EHR implementation can also improve the quality of patient care.
If you're new to EHRs, it's important to understand the distinction between “EHR” and “EMR” (electronic medical records). An EHR software makes patient health records available across multiple healthcare settings, providing a comprehensive, multidisciplinary view of a patient's medical history. While often used interchangeably, EHR differs from EMR, which manages digital patient charts accessed within only one organization.
A well-matched EHR can help your practice reap many benefits. However, a system that doesn't align with your practice's specific EHR requirements can have the opposite effect — creating hassles and delays for providers and staff, burying crucial clinical information, and potentially compromising regulatory compliance.
Careful EHR evaluation can significantly alleviate such concerns. However, it's not uncommon for smaller practices, especially those just starting out, to feel overwhelmed by the EHR implementation process. To help, we've broken down this complex process into a clear, actionable guide that includes tips and helpful recommendations.
Make your EHR rollout smooth from day one. This implementation guide helps ensure a seamless launch, with fewer headaches and faster ROI. |
EHR implementation checklist
Integrating an EHR system with existing workflows is a multi-step process requiring careful planning and precise execution.

The following EHR implementation checklists explain the key steps and considerations for implementing an EHR system and what each one requires.
Assembling a project team
Tebra's 2024 survey of healthcare providers from small private practices using EHRs revealed that developing a training plan for staff was the top action they would take to prepare for a new EHR (41%). A dedicated project team ensures accountability and smooth coordination across departments. Include representatives from clinical, administrative, and IT teams, and consider these steps:
- Assign a project manager to oversee the implementation
- Identify key stakeholders, such as lead physicians, administrative staff, and IT personnel
- Define roles and responsibilities for each team member to align with your implementation strategies
- Establish a communication plan to keep clinicians and other team members informed of progress
- Schedule regular team meetings to address challenges and ensure input from healthcare professionals
Conducting a workflow analysis
Analyzing workflows ensures the EHR system aligns with your practice's specific needs. It involves the following tasks:
- Map out current workflows for administrative and clinical processes
- Identify inefficiencies, redundancies, and gaps in existing processes
- Engage staff to gather input on challenges and areas for improvement
- Document desired workflows to guide system customization with templates and tailored solutions
- Plan how the EHR will integrate with other information systems like billing platforms, ensuring seamless health IT integration
- Address change management strategies to smooth the transition for all staff
Establishing a timeline
A well-defined timeline keeps the implementation process on track. Here's how to create one:
- Develop a project timeline with key milestones for each implementation phase
- Include deadlines for system installation, training, data migration, and testing
- Allocate buffer time to address unforeseen delays in the rollout process
- Share the timeline with all stakeholders and adjust as needed to manage time-consuming tasks efficiently
- Use project management tools to ensure smooth planning and execution
Staff training
In 2024, Tebra surveyed 183 healthcare providers exclusively from small private practices who use EHRs regularly. When asked about the most important actions they would take to prepare for a new EHR, developing a training plan for staff was the top answer (41%). Here are the typical steps:
- Assess staff competency to identify knowledge gaps specific to their roles as end-users
- Develop training programs and materials, such as manuals and videos, tailored to each role
- Create practice accounts for hands-on training to prepare super users who can assist during implementation
- Conduct role-specific training sessions that simulate real-world scenarios
- Schedule refresher training post-implementation to address ongoing challenges and updates
System installation
Proper installation ensures the EHR system is set up correctly to meet practice requirements. Set it up by following these steps:
- Coordinate with the EHR vendor to schedule installation dates
- Verify that all hardware and software meet the specifications required for EHR system implementation
- Set up integrations with existing tools, such as patient portals or billing systems, to ensure interoperability
- Test connectivity and performance of the installed system to confirm it operates seamlessly
- Establish IT support availability for troubleshooting during installation
Data migration
Complete data migration supports a smooth transfer of existing patient records into the new system. The steps are:
- Validate and standardize patient information to ensure consistency
- Complete data mapping to align old records with the new EHR structure
- Secure sensitive data with encryption and data backup measures
- Test data access post-migration to ensure usability and data transfer accuracy
- Verify data integrity through audits to identify and resolve discrepancies
System testing
Confirm all functions are tested and operating correctly before the go-live date by doing the following:
- Conduct system tests to ensure functionality across modules within the electronic health record system
- Complete security validation to identify vulnerabilities and ensure compliance with industry standards
- Verify integrations with third-party systems, such as labs or pharmacies, to enhance decision support capabilities
- Simulate real-world scenarios, including patient check-ins and billing processes, to verify quality of care
- Develop a downtime plan to manage operations in case of system failure
Going live
The launch phase marks the official switch to the new EHR system. Here's how to do it right:
- Notify all staff of the go-live date and provide last-minute reminders
- Assign on-site support staff to assist with troubleshooting during the transition to the new electronic health record
- Monitor system performance closely during the first week to ensure meaningful use compliance
- Gather staff feedback on usability and address any immediate issues related to patient engagement
- Maintain a clear escalation plan for unresolved technical problems
Monitoring and support
Post-implementation monitoring ensures the EHR system continues to meet practice needs. Make sure you:
- Schedule regular check-ins with staff to gather feedback on the system and health information technology features
- Track key performance indicators (KPIs), such as patient wait times and billing accuracy, to measure success in healthcare organizations
- Provide ongoing training to address evolving needs or system updates, using case studies to inform improvements
- Establish a dedicated support channel for troubleshooting and collaboration
- Work with the vendor to implement updates and resolve recurring issues efficiently
Additional considerations
In addition to the steps above,the following points can smooth the process as you implement your new EHR system.
Plan for downtime
According to Tebra's 2024 EHR study, 28% of private practice providers say that managing downtime is one of the most significant challenges they face when using their current EHR. Downtime can be disastrous when it means you can't access a patient's record when needed. You may have to reschedule patients, leading to wasted time overall and lost revenue.
Downtime during EHR implementation is inevitable, but careful planning can minimize the impact on your practice. Keep these planning recommendations in mind:
- Schedule downtime during off-peak hours to reduce care disruption
- Develop a contingency plan outlining manual processes for essential tasks, such as patient check-ins, charting, and medication management
- Inform all staff about these temporary procedures and make sure they have the necessary tools to continue operations during downtime
- Communicate clearly with patients about the expected downtime and inform them of any anticipated delays in service, refills, and scheduling
Monitor and evaluate post-implementation
Monitoring and evaluating the new EHR is vital to ensure it operates correctly and meets practice needs. It's also a way to identify any issues. After EHR implementation, consider the following recommendations:
- Hold check-ins with the implementation team to discuss system performance
- Meet with staff to discuss any issues
- Track KPIs (e.g., patient wait times, billing accuracy, user satisfaction) to provide insight into the system's impact
Common EHR adoption challenges and solutions
Adopting an EHR system can provide significant benefits to healthcare practices, but it also comes with several challenges that can hinder successful implementation. Understanding these obstacles and implementing proactive solutions can help practices plan effectively and avoid common pitfalls.
Cost
The high expenses associated with EHR implementation, including software, hardware, training, and maintenance, can strain a smaller practice's budget. Practices must also account for potential hidden costs, such as lost productivity during the transition period.
Solution: Careful financial planning is essential. Create a detailed budget that includes initial purchase costs, ongoing expenses (such as maintenance and upgrades), and hidden costs like staff overtime. Investigate funding options or set aside resources before starting implementation to ensure financial stability throughout the process.
Technical capabilities
Technical limitations, such as inadequate hardware, limited internet connectivity options, and insufficient IT support, can discourage practices from adopting EHR systems. Additionally, systems that fail to integrate with existing workflows or other organizations can reduce efficiency and create frustration among users. A literature review by the Office of the National Coordinator for Health Information Technology (ONC) highlights that poor system integration and functionality issues, such as problems with electronic ordering, can negatively impact EHR adoption.
Solution: Address technical gaps before implementation begins. Replace outdated hardware, purchase necessary equipment, and switch to a high-speed internet provider if needed. Additionally, choose an EHR system that offers seamless integration with your practice's existing workflows and systems, and ensure IT support is readily available during and after implementation.
Team resistance
Resistance from both clinical and non-clinical staff is a major challenge. Less tech-savvy team members may struggle with the system, while others may resist the change due to unfamiliarity with new workflows. Mandating immediate compliance without input from providers can further increase resistance, as noted in the ONC-commissioned literature review.
Solution: Foster a supportive environment by engaging your team in open discussions before implementation. Build consensus by encouraging questions, considering differing opinions, and showing empathy for concerns. Involve staff in the selection process to increase buy-in and create a respectful, collaborative work environment that emphasizes the benefits of the new system for everyone.
Training requirements
Comprehensive training is critical for ensuring a smooth transition and maximizing the benefits of an EHR system. The ONC review found that insufficient training is a common cause of implementation failure, leading to lower system usability and increased stress for users.
Solution: Plan and budget for comprehensive, mandatory training for all staff members. Allocate dedicated training time in staff schedules and tailor training to match users' skills and roles. Communicate the importance of training to team members and provide ongoing support as they adapt to the new workflows.
Security concerns
Data security is a top priority when implementing an EHR system. Practices must address potential risks, such as data breaches, cyberattacks, or data loss, before implementation. Ensuring compliance with Health Insurance Portability and Accountability Act (HIPAA) regulations and implementing robust privacy measures are essential steps to safeguard patient data.
Solution: Budget for and implement cybersecurity protocols and safeguards before EHR implementation. Review HIPAA and other regulatory requirements carefully and work with vendors to ensure compliance. Establish robust security measures, such as encryption, regular audits, and staff training on cybersecurity best practices to protect patient data and mitigate risks.
Planning and support
Inadequate planning during the implementation phase is a leading cause of EHR adoption failure, as the ONC study highlights. Common planning issues include failing to involve providers in the decision-making process, neglecting to invest in workflow analysis, and offering limited post-implementation support.
Solution: Invest time in the planning phase by conducting workflow analyses, gathering staff input, and allocating resources for post-implementation support. Work closely with your vendor to ensure the EHR system aligns with your practice's needs and establish a clear roadmap for implementation that includes continuous support and adjustments as needed.
Love content like this? Join thousands of independent providers who receive our weekly newsletter with tips on running a more efficient, profitable practice. Sign up for the newsletter. |
Real-world example of successful EHR implementation
Fabius Santos, CEO at Optimal Psychiatry and Wellness, shared insights on successful EHR implementation during a recent Tebra webinar. For Santos, adopting a one-stop, customizable EHR solution transformed his practice, saving valuable time and reducing burnout: "As an independent practice owner, I can tell you that the EHR does help us providers optimize workflows — from clinical charting to patient documentation to specialist referrals. And it saves time, valuable time, that we use on manual tasks or paper charting."
“As an independent practice owner, I can tell you that the EHR does help us providers optimize workflows — from clinical charting to patient documentation to specialist referrals.”
Santos emphasized the importance of preparation, including defining requirements and understanding associated costs: "This is a big decision … Writing it all down ahead of time will really help you ensure compliance with all the relevant regulation standards. There's different state regulations, and obviously understanding the associated costs."
Team communication is also critical to overcoming resistance: "If there's a big gap between how I see things and maybe how they see things, maybe that would provide a good opportunity to discuss why that is. And hopefully we can make people more comfortable with the change."
Santos acknowledged the learning curve but stressed the payoff: "Learning EHR is difficult, and it takes a commitment from everyone involved. You have to be ready to do work on your part if you want to get results."
By customizing his EHR system, Santos was able to improve workflows and streamline operations: "We were able to customize everything the way that I wanted to and hopefully work on improving our workloads and our processes. Today, luckily we're doing a lot better and everything's running smoothly."
For more details on Santos' experience, watch the full webinar here.
Next steps toward implementing the best EHR system for your practice
Tebra's all-in-one, ONC-certified practice management software, Tebra EHR+, empowers private practices with highly customizable features and ease-of-use across functionalities. Our platform puts everything you need to run your practice at your fingertips so you can spend more time on what matters most.

If you're considering EHR or switching EHR systems, Tebra provides seamless integrations, features that streamline scheduling, charting, coding, and billing, and robust training and support. Take a product tour (no credit card required) or schedule a demo to see our solution in action:
Getting ready to implement a new EHR? These next steps can help you prepare:
- How to Establish a Budget for an EHR – Learn how to set your budget and plan for costs that often get overlooked.
- How to Identify EHR Needs by Specialty – Make sure your EHR supports the workflows and care models specific to your specialty.
- Want expert guidance through your EHR transition? Book a free demo and see how Tebra simplifies implementation.
- Current Version – Feb 27, 2025Written by: Amantha MayChanges: This article was updated to include the most relevant and up-to-date information available.
Stay Ahead with Expert Healthcare & Billing Insights
Get the latest industry updates, financial tips, and expert strategies — delivered straight to your inbox.
Suggested for you
Stay Ahead with Expert Healthcare & Billing Insights
Get the latest industry updates, financial tips, and expert strategies — delivered straight to your inbox.